08.00 – 16.30

Registration (Foyer)

Venue

Ballroom B

09.00 – 09.30

InCoB2012 Opening Ceremony

- Sakarindr Bhumiratana
President, King Mongkut’s University of Technology Thonburi (KMUTT), Thailand
- Shoba Ranganathan
President, Asia-Pacific Bioinformatics Network (APBioNet)
- Thaweesak Koanantakool
President, National Science and Technology Development Agency (NSTDA), Thailand

09.30 – 10.15

Keynote 1:Jurg Ott
Statistical Approaches to Testing and Estimating the Number of Functional Variants in Complex Disease
Chair:Prasit Palittapongarnpim

10.15 – 10.45

Coffee break

10.45 – 11.30

Keynote 2: Tatsuhiko Tsunoda
Genomic Medicine's Milestones and Future
Chair: Sissades Tongsim

11.30 – 12.00

APBioNet 2012 Report

12.00 – 12.15

12.15 – 13.10

Lunch

Venue

Ballroom B

Krungthep 2

Krungthep 4

Krungthep 1

Concurrent
Session

1: Disease informatics
Chairperson: J Ott

2: Motifs, patterns, mutations & bioimaging
Chairperson: BA Gaëta

3: Proteins, ligands & docking
Chairperson: R Samudrala

4: Immunological methods
Chairperson: V Brusic

13.10 – 13.30

1) Disease gene identification by RandomWalk on multigraphs merging heterogeneous genomic and phenotype data

Y Li and J Li

13.10
–
13.30

1) A hybrid method for the exact planted (l, d) motif finding problem and its parallelization

M Abbas, M Abouelhoda and H Bahig

13.10
–
13.30

1) The parasite specific substitution matrices improve the annotation of apicomplexan proteins

J Ali, SR Thummala and A Ranjan

13.10
–
13.30

1) Hybrid biogeography based simultaneous feature selection and MHC class I peptide binding prediction using support vector machines and random forests

A Srivastava, S Ghosh, N Anantharaman and VK Jayaraman

Venue

Ballroom B

Krungthep 2

Krungthep 4

Krungthep 1

Concurrent
Session

1: Disease informatics
Chairperson: J Ott

2: Motifs, patterns, mutations & bioimaging
Chairperson: BA Gaëta

3: Proteins, ligands & docking
Chairperson: R Samudrala

4: Immunological methods
Chairperson: V Brusic

13.30 – 13.50

2) An automatic device for detection and classification of malaria parasite species in thick blood film

S Kaewkamnerd, C Uthaipibull, A Intarapanich, M Pannarata, S Chaotheing and S Tongsima

13.30
–
13.50

2) In silico engineering of aggregation-prone recombinant proteins for substrate recognition by the chaperonin GroEL

V Kumar, A Punetha, D Sundar and T Chaudhuri

13.30
–
13.50

2) Space-related pharma-motifs for fast search protein binding motifs and polypharmacological targets

YY Chiu, CY Lin, CT Lin, KC Hsu, LZ Chang and JM Yang

13.30
–
13.50

2) PAAQD: Predicting immunogenicity of MHC class I binding peptides using amino acid pairwise contact potentials and quantum topological molecular similarity descriptors

T. Saethang, O Hirose,I Kimkong, VA Tran, XT Dang, LAT Nguyen, TKT Le, M Kubo, Y Yamada and K Satou

13.50 – 14.10

3) A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree

EY Lai, WB Wang, T Jiang and KP Wu

13.50
–
14.10

3) An approach to identifying drug resistance associated mutations in bacterial strains

M Woźniak, J Tiuryn and L Wong

13.50
–
14.10

3) Functional relevance of dynamic properties of Dimeric NADP-dependent Isocitrate Dehydrogenases

R Vinekar, C Verma and I Ghosh  

13.50
–
14.00

A) The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements

M Kidd, Z Chen, Y Wang, K Jackson, L Zhang, S Boyd,A Fire, M Tanaka, BA Gaëta and A Collins  

14.10 – 14.30

4) B-cell epitope prediction through a graph model

L Zhao, L Wong, L Lu, SCH Hoi and J Li

14.10
–
14.30

4) A probabilistic coevolutionary biclustering algorithm for discovering coherent patterns in gene expression dataset

JG Joung, SJ Kim, SY Shin and BT Zhang

14.10
–
14.30

4) Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition

HL Huang, P Charoenkwan, TF Kao, HC Lee, FL Chang, WL Huang, SJ Ho, LS Shu, WL Chen and SY Ho

14.00
–
14.30

ML Competition

14.30 – 14.50

5) Mathematical modeling of the immune system recognition to mammary carcinoma antigen

C Bianca, F Chiacchio,  F Pappalardo and M Pennisi

14.30
–
14.50

5) Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing

ECY Su, JM Chang, CW Cheng, TY Sung and WL Hsu

14.30
–
14.50

5) Blocking protein kinase C signaling pathway: Mechanistic insights into the anti-leishmanial activity of prospective herbal drugs from Withania somnifera

A Grover, SP Katiyar, J Jeyakanthan, VK Dubey and
D Sundar

Venue

Ballroom B

Krungthep 2

Krungthep 4

Krungthep 1

Concurrent
Session

1: Disease informatics
Chairperson: J Ott

2: Motifs, patterns, mutations & bioimaging
Chairperson: BA Gaëta

3: Proteins, ligands & docking
Chairperson: R Samudrala

4: Immunological methods
Chairperson: V Brusic

14.50 – 15.00

A) Java-based tool for the automated erythema quantification

L Paulis, O Pechanova, F Jagla and PM Putora

14:50
–
15.10

6) The study of muscle remodeling in drosophila metamorphosis using in vivo microscopy and bioimage informatics

R Chinta, JH Tan and M Wasser

14.50
–
15.00

A) RedoxDB – a curated database for experimentally verified protein oxidative modification

MA Sun, Y Wang, Q zhang, Wei Ge and D Guo

15.00 – 15.10

B) Using system biology to understand and overcome resistance in cancer therapy

PT Ram

15.00
–
15.10

B) Key interaction score system (KISS) for evaluation of molecular docking programs

DBRKG Udatha, N Sugaya, G Panagiotou and L Olsson

15.10 – 15.20

C) WNV Typer: A server for genotyping of west Nile viruses using alignment-free method based on return time distribution

P Kolekar, N Hake, M Kale and U Kulkarni-Kale

15.10
–
15.20

A) A guide to 3D gaming technologies for biomolecular visualization

D Tanramluk and R Akavipat

15.10
–
15.20

C) Discovery of novel interactions in Elaeis guineensis Jacq. detoxification system

T Panrat, S Nualkaew, A Nakkaew, A Phongdara and MT Tammi

15.30 – 16.30

APBioNet Annual General Meeting (Ballroom B)

16.30 – 18.00

Poster Session 1 (Foyer): odd-numbered posters

16.00 – 18.00

Reception Party (Foyer)